PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00140.1.g00560.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 218aa    MW: 24013 Da    PI: 7.1148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00140.1.g00560.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.6e-142376148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                                  rg W++eEde+l   ++ +G  tW+++a+         ++R++k+c++rw +yl
  Zjn_sc00140.1.g00560.1.sm.mk 23 RGLWSPEEDERLFTQITCHGVSTWSSVAQLAViilhsgLRRSGKSCRLRWMNYL 76
                                  788*************************************************97 PP

2Myb_DNA-binding36.98.2e-1284125346
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   + ++ E+e ++ + k lG++ W++Ia++++ gRt++ +k+ w++
  Zjn_sc00140.1.g00560.1.sm.mk  84 PISEREEETIISLQKSLGNR-WSAIAAELP-GRTDNAIKNNWNS 125
                                   66899***************.*********.*********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9171876IPR017930Myb domain
SMARTSM007171.7E-82278IPR001005SANT/Myb domain
SuperFamilySSF466897.26E-2622123IPR009057Homeodomain-like
PfamPF002492.0E-112376IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-182483IPR009057Homeodomain-like
CDDcd001677.97E-72676No hitNo description
PROSITE profilePS5129420.21977131IPR017930Myb domain
SMARTSM007177.7E-1081129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2284131IPR009057Homeodomain-like
PfamPF002492.6E-1084125IPR001005SANT/Myb domain
CDDcd001671.08E-784124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MARKPNQHAA AGTGAAAEKK ERRGLWSPEE DERLFTQITC HGVSTWSSVA QLAVIILHSG  60
LRRSGKSCRL RWMNYLRPDL RKEPISEREE ETIISLQKSL GNRWSAIAAE LPGRTDNAIK  120
NNWNSRIRKR LNAAANAGQC RAGYSTAEGQ APAAGEKEEH TNNAAKAAAP SPIPVYACQL  180
LDGGAQAFHE LDYVDDLLID VPGHMEAWES ELFSLDIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-242313127128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9095234e-35FJ909523.1 Zea mays subsp. mays Mu tranposon insertion Mu1007143 flanking sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968332.15e-82PREDICTED: transcription factor MYB82-like
SwissprotP200275e-44MYB3_HORVU; Myb-related protein Hv33
TrEMBLK3XL226e-82K3XL22_SETIT; Uncharacterized protein
STRINGSi002595m2e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-42myb domain protein 61